Solution structure of the CBM10 cellulose binding module from Pseudomonas xylanase A

Biochemistry. 2000 Feb 8;39(5):978-84. doi: 10.1021/bi992163+.

Abstract

Plant cell wall hydrolases generally have a modular structure consisting of a catalytic domain linked to one or more noncatalytic carbohydrate-binding modules (CBMs), whose common function is to attach the enzyme to the polymeric substrate. Xylanase A from Pseudomonas fluorescens subsp. cellulosa (Pf Xyn10A) consists of a family 10 catalytic domain, an N-terminal family IIa cellulose-binding module, and an internal family 10 cellulose-binding module. The structure of the 45-residue family 10 CBM has been determined in solution using NMR. It consists of two antiparallel beta-sheets, one with two strands and one with three, with a short alpha-helix across one face of the three-stranded sheet. There is a high density of aromatic residues on one side of the protein, including three aromatic residues (Tyr8, Trp22, and Trp24), which are exposed and form a flat surface on one face, in a classical polysaccharide-binding arrangement. The fold is closely similar to that of the oligonucleotide/oligosaccharide-binding (OB) fold, but appears to have arisen by convergent evolution, because there is no sequence similarity, and the presumed binding sites are on different faces.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Cellulose / metabolism*
  • Crystallography, X-Ray
  • Endo-1,4-beta Xylanases
  • Ligands
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptide Fragments / chemistry*
  • Peptide Fragments / genetics
  • Peptide Fragments / metabolism*
  • Protein Binding / genetics
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Pseudomonas fluorescens / enzymology*
  • Pseudomonas fluorescens / genetics
  • Recombinant Proteins / biosynthesis
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Solutions
  • Xylosidases / chemistry*
  • Xylosidases / genetics
  • Xylosidases / metabolism*

Substances

  • Ligands
  • Peptide Fragments
  • Recombinant Proteins
  • Solutions
  • Cellulose
  • Xylosidases
  • Endo-1,4-beta Xylanases

Associated data

  • PDB/1QLD