Structure of the influenza C virus CM2 protein transmembrane domain obtained by site-specific infrared dichroism and global molecular dynamics searching

J Biol Chem. 2000 Feb 11;275(6):4225-9. doi: 10.1074/jbc.275.6.4225.

Abstract

The 115-residue protein CM2 from Influenza C virus has been recently characterized as a tetrameric integral membrane glycoprotein. Infrared spectroscopy and site-directed infrared dichroism were utilized here to determine its transmembrane structure. The transmembrane domain of CM2 is alpha-helical, and the helices are tilted by beta = (14.6 +/- 3.0) degrees from the membrane normal. The rotational pitch angle about the helix axis omega for the 1-(13)C-labeled residues Gly(59) and Leu(66) is omega = (218 +/- 17) degrees, where omega is defined as zero for a residue pointing in the direction of the helix tilt. A detailed structure was obtained from a global molecular dynamics search utilizing the orientational data as an energy refinement term. The structure consists of a left-handed coiled-coil with a helix crossing angle of Omega = 16 degrees. The putative transmembrane pore is occluded by the residue Met(65). In addition hydrogen/deuterium exchange experiments show that the core is not accessible to water.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Deuterium
  • Gammainfluenzavirus / chemistry*
  • Hydrogen
  • Membrane Glycoproteins / chemistry
  • Models, Molecular
  • Peptide Fragments / chemistry
  • Protein Structure, Secondary
  • Spectroscopy, Fourier Transform Infrared
  • Viral Matrix Proteins / chemistry*
  • Viral Proteins / chemistry

Substances

  • CM2 protein, Influenza C virus
  • Membrane Glycoproteins
  • Peptide Fragments
  • Viral Matrix Proteins
  • Viral Proteins
  • Hydrogen
  • Deuterium