Characterization of the protocatechuic acid catabolic gene cluster from Streptomyces sp. strain 2065

Appl Environ Microbiol. 2000 Apr;66(4):1499-508. doi: 10.1128/AEM.66.4.1499-1508.2000.

Abstract

Protocatechuate 3,4-dioxygenase (EC 1.13.11.3) catalyzes the ring cleavage step in the catabolism of aromatic compounds through the protocatechuate branch of the beta-ketoadipate pathway. A protocatechuate 3,4-dioxygenase was purified from Streptomyces sp. strain 2065 grown in p-hydroxybenzoate, and the N-terminal sequences of the beta- and alpha-subunits were obtained. PCR amplification was used for the cloning of the corresponding genes, and DNA sequencing of the flanking regions showed that the pcaGH genes belonged to a 6. 5-kb protocatechuate catabolic gene cluster; at least seven genes in the order pcaIJFHGBL appear to be transcribed unidirectionally. Analysis of the cluster revealed the presence of a pcaL homologue which encodes a fused gamma-carboxymuconolactone decarboxylase/beta-ketoadipate enol-lactone hydrolase previously identified in the pca gene cluster from Rhodococcus opacus 1CP. The pcaIJ genes encoded proteins with a striking similarity to succinyl-coenzyme A (CoA):3-oxoacid CoA transferases of eukaryotes and contained an indel which is strikingly similar between high-G+C gram-positive bacteria and eukaryotes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Blotting, Southern
  • Cloning, Molecular
  • Genes, Bacterial*
  • Humans
  • Hydroxybenzoates / metabolism*
  • Molecular Sequence Data
  • Multigene Family
  • Phylogeny
  • Protocatechuate-3,4-Dioxygenase / chemistry
  • Protocatechuate-3,4-Dioxygenase / genetics
  • Protocatechuate-3,4-Dioxygenase / isolation & purification
  • Protocatechuate-3,4-Dioxygenase / metabolism*
  • Sequence Analysis, DNA
  • Soil Microbiology
  • Streptomyces / genetics*
  • Streptomyces / isolation & purification
  • Streptomyces / metabolism*

Substances

  • Hydroxybenzoates
  • protocatechuic acid
  • Protocatechuate-3,4-Dioxygenase

Associated data

  • GENBANK/AF109386