Substrate specificity in glycoside hydrolase family 10. Tyrosine 87 and leucine 314 play a pivotal role in discriminating between glucose and xylose binding in the proximal active site of Pseudomonas cellulosa xylanase 10A

J Biol Chem. 2000 Jul 28;275(30):23027-33. doi: 10.1074/jbc.M000128200.

Abstract

The Pseudomonas family 10 xylanase, Xyl10A, hydrolyzes beta1, 4-linked xylans but exhibits very low activity against aryl-beta-cellobiosides. The family 10 enzyme, Cex, from Cellulomonas fimi, hydrolyzes aryl-beta-cellobiosides more efficiently than does Xyl10A, and the movements of two residues in the -1 and -2 subsites are implicated in this relaxed substrate specificity (Notenboom, V., Birsan, C., Warren, R. A. J., Withers, S. G., and Rose, D. R. (1998) Biochemistry 37, 4751-4758). The three-dimensional structure of Xyl10A suggests that Tyr-87 reduces the affinity of the enzyme for glucose-derived substrates by steric hindrance with the C6-OH in the -2 subsite of the enzyme. Furthermore, Leu-314 impedes the movement of Trp-313 that is necessary to accommodate glucose-derived substrates in the -1 subsite. We have evaluated the catalytic activities of the mutants Y87A, Y87F, L314A, L314A/Y87F, and W313A of Xyl10A. Mutations to Tyr-87 increased and decreased the catalytic efficiency against 4-nitrophenyl-beta-cellobioside and 4-nitrophenyl-beta-xylobioside, respectively. The L314A mutation caused a 200-fold decrease in 4-nitrophenyl-beta-xylobioside activity but did not significantly reduce 4-nitrophenyl-beta-cellobioside hydrolysis. The mutation L314A/Y87A gave a 6500-fold improvement in the hydrolysis of glucose-derived substrates compared with xylose-derived equivalents. These data show that substantial improvements in the ability of Xyl10A to accommodate the C6-OH of glucose-derived substrates are achieved when steric hindrance is removed.

MeSH terms

  • Base Sequence
  • Cellobiose / analogs & derivatives
  • Cellobiose / metabolism
  • Circular Dichroism
  • DNA Primers
  • Glucose / metabolism*
  • Glycoside Hydrolases / chemistry
  • Glycoside Hydrolases / metabolism*
  • Hydrolysis
  • Leucine / metabolism*
  • Pseudomonas / enzymology*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Substrate Specificity
  • Tyrosine / metabolism*
  • Xylan Endo-1,3-beta-Xylosidase
  • Xylans / metabolism
  • Xylose / metabolism*
  • Xylosidases / chemistry
  • Xylosidases / metabolism*

Substances

  • DNA Primers
  • Recombinant Proteins
  • Xylans
  • cellobiosyl fluoride
  • Cellobiose
  • Tyrosine
  • Xylose
  • Glycoside Hydrolases
  • Xylosidases
  • Xylan Endo-1,3-beta-Xylosidase
  • Leucine
  • Glucose