Catalytic action of fuculose 1-phosphate aldolase (class II) as derived from structure-directed mutagenesis

Biochemistry. 2000 May 23;39(20):6033-41. doi: 10.1021/bi9927686.

Abstract

Previous analyses established the structures of unligated L-fuculose 1-phosphate aldolase and of the enzyme ligated with an inhibitor mimicking the substrate dihydroxyacetone phosphate. These data allowed us to suggest a catalytic mechanism. On the basis of this proposal, numerous mutations were now introduced at the active center and tested with respect to their catalytic rates and their product distributions. For several mutants, the structures were determined. The results demonstrate the catalytic importance of some particular residues in defined conformations and in the mobile C-terminal chain end. Moreover, they led to a modification of the proposed mechanism. The effect of some mutations on enantioselectivity and on the ratio of diastereomer formation indicates clearly the binding site of the aldehyde moiety in relation to the other substrate dihydroxyacetone phosphate.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aldehyde-Lyases / antagonists & inhibitors
  • Aldehyde-Lyases / chemistry*
  • Aldehyde-Lyases / genetics*
  • Aldehyde-Lyases / metabolism
  • Aldehydes / chemistry
  • Amino Acid Substitution / genetics
  • Bacterial Proteins*
  • Binding Sites / genetics
  • Catalysis
  • Crystallography, X-Ray
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / metabolism
  • Escherichia coli / enzymology
  • Escherichia coli Proteins*
  • Fructose-Bisphosphate Aldolase / antagonists & inhibitors
  • Fructose-Bisphosphate Aldolase / chemistry
  • Fructose-Bisphosphate Aldolase / genetics
  • Fructose-Bisphosphate Aldolase / metabolism
  • Hydroxamic Acids / chemistry
  • Hydroxamic Acids / metabolism
  • Ligands
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Peptide Fragments / chemistry
  • Peptide Fragments / genetics
  • Peptide Fragments / metabolism
  • Point Mutation
  • Stereoisomerism
  • Structure-Activity Relationship
  • Zinc / chemistry
  • Zinc / metabolism

Substances

  • Aldehydes
  • Bacterial Proteins
  • Enzyme Inhibitors
  • Escherichia coli Proteins
  • Hydroxamic Acids
  • Ligands
  • Peptide Fragments
  • phosphoglycolohydroxamate
  • Aldehyde-Lyases
  • FucA protein, bacteria
  • fucA protein, E coli
  • Fructose-Bisphosphate Aldolase
  • L-fuculosephosphate aldolase
  • Zinc

Associated data

  • PDB/1DZU
  • PDB/1DZV
  • PDB/1DZW
  • PDB/1DZX
  • PDB/1DZY
  • PDB/1DZZ