Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum

Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6316-21. doi: 10.1073/pnas.97.12.6316.

Abstract

The RNA polymerase subunit RPB10 displays a high level of conservation across archaea and eukarya and is required for cell viability in yeast. Structure determination of this RNA polymerase subunit from Methanobacterium thermoautotrophicum reveals a topology, which we term a zinc-bundle, consisting of three alpha-helices stabilized by a zinc ion. The metal ion is bound within an atypical CX(2)CX(n)CC sequence motif and serves to bridge an N-terminal loop with helix 3. This represents an example of two adjacent zinc-binding Cys residues within an alpha-helix conformation. Conserved surface features of RPB10 include discrete regions of neutral, acidic, and basic residues, the latter being located around the zinc-binding site. One or more of these regions may contribute to the role of this subunit as a scaffold protein within the polymerase holoenzyme.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • DNA / metabolism
  • DNA-Directed RNA Polymerases / chemistry*
  • Methanobacterium / enzymology*
  • Molecular Sequence Data
  • Protein Folding
  • Protein Structure, Secondary
  • RNA / metabolism
  • Zinc / chemistry*

Substances

  • RNA
  • DNA
  • DNA-Directed RNA Polymerases
  • Zinc

Associated data

  • PDB/1EF4