The first structure of UDP-glucose dehydrogenase reveals the catalytic residues necessary for the two-fold oxidation

Biochemistry. 2000 Jun 13;39(23):7012-23.

Abstract

Bacterial UDP-glucose dehydrogenase (UDPGlcDH) is essential for formation of the antiphagocytic capsule that protects many virulent bacteria such as Streptococcus pyogenes andStreptococcus pneumoniae type 3 from the host's immune system. We have determined the X-ray structures of both native and Cys260Ser UDPGlcDH from S. pyogenes (74% similarity to S. pneumoniae) in ternary complexes with UDP-xylose/NAD(+) and UDP-glucuronic acid/NAD(H), respectively. The 402 residue homodimeric UDPGlcDH is composed of an N-terminal NAD(+) dinucleotide binding domain and a C-terminal UDP-sugar binding domain connected by a long (48 A) central alpha-helix. The first 290 residues of UDPGlcDH share structural homology with 6-phosphogluconate dehydrogenase, including conservation of an active site lysine and asparagine that are implicated in the enzyme mechanism. Also proposed to participate in the catalytic mechanism are a threonine and a glutamate that hydrogen bond to a conserved active site water molecule suitably positioned for general acid/base catalysis.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Binding Sites
  • Crystallography, X-Ray
  • Dimerization
  • Hydrogen Bonding
  • Models, Molecular
  • Molecular Sequence Data
  • NAD / chemistry
  • Protein Conformation
  • Protein Structure, Tertiary
  • Sequence Alignment
  • Streptococcus pyogenes / enzymology*
  • Uridine Diphosphate Glucose Dehydrogenase / chemistry*
  • Uridine Diphosphate Glucuronic Acid / chemistry
  • Uridine Diphosphate Xylose / chemistry

Substances

  • Bacterial Proteins
  • NAD
  • Uridine Diphosphate Glucuronic Acid
  • Uridine Diphosphate Xylose
  • Uridine Diphosphate Glucose Dehydrogenase