PSF/p54(nrb) stimulates "jumping" of DNA topoisomerase I between separate DNA helices

Biochemistry. 2000 Jun 27;39(25):7552-8. doi: 10.1021/bi992898e.

Abstract

We have previously shown [Straub et al. (1998) J. Biol. Chem. 273, 26261] that the pyrimidine tract binding protein associated splicing factor PSF/p54(nrb) binds and stimulates DNA topoisomerase I. Here we show that cleavage and religation half-reactions of topoisomerase I are unaffected by PSF/p54(nrb), whereas the propensity of the enzyme to jump between separate DNA helices is stimulated. To demonstrate such an effect, topoisomerase I was first captured in suicidal cleavage of an oligonucleotide substrate. Subsequently, a cleavage/ligation equilibrium was established by adding a ligation donor under conditions allowing recleavage of the ligated substrate. Finally, a second oligonucleotide was added to the mixture, which also allowed suicidal cleavage by topoisomerase I, but did not accommodate the ligation donor of the first oligonucleotide. Thus, topoisomerase I was given the choice to engage in repeated cleavage/ligation cycles of the first oligonucleotide or to jump to the second suicide substrate and get trapped. PSF/p54(nrb) enhanced the cleavage rate of the second oligonucleotide (11-fold), suggesting that it stimulates the dissociation of topoisomerase I after ligation. Thus, stimulation of topoisomerase I catalysis by PSF/p54(nrb) seems to be affected by mobilization of the enzyme.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cell Line
  • DNA / chemistry
  • DNA / metabolism*
  • DNA Topoisomerases, Type I / metabolism*
  • DNA-Binding Proteins
  • Humans
  • Kinetics
  • Nuclear Matrix-Associated Proteins*
  • Nuclear Proteins / metabolism*
  • Octamer Transcription Factors
  • RNA-Binding Proteins / metabolism*
  • Recombinant Proteins / metabolism

Substances

  • DNA-Binding Proteins
  • NONO protein, human
  • Nuclear Matrix-Associated Proteins
  • Nuclear Proteins
  • Octamer Transcription Factors
  • RNA-Binding Proteins
  • Recombinant Proteins
  • DNA
  • DNA Topoisomerases, Type I