Design, characterization, and structure of a biologically active single-chain mutant of human IFN-gamma

J Mol Biol. 2000 May 26;299(1):169-79. doi: 10.1006/jmbi.2000.3734.

Abstract

A mutant form of human interferon-gamma (IFN-gamma SC1) that binds one IFN-gamma receptor alpha chain (IFN-gamma R alpha) has been designed and characterized. IFN-gamma SC1 was derived by linking the two peptide chains of the IFN-gamma dimer by a seven-residue linker and changing His111 in the first chain to an aspartic acid residue. Isothermal titration calorimetry shows that IFN-gamma SC1 forms a 1:1 complex with its high-affinity receptor (IFN-gamma R alpha) with an affinity of 27(+/- 9) nM. The crystal structure of IFN-gamma SC1 has been determined at 2.9 A resolution from crystals grown in 1.4 M citrate solutions at pH 7.6. Comparison of the wild-type receptor-binding domain and the Asp111-containing domain of IFN-gamma SC1 show that they are structurally equivalent but have very different electrostatic surface potentials. As a result, surface charge rather than structural changes is likely responsible for the inability of the His111-->Asp domain of to bind IFN-gamma R alpha. The AB loops of IFN-gamma SC1 adopt conformations similar to the ordered loops of IFN-gamma observed in the crystal structure of the IFN-gamma/IFN-gamma R alpha complex. Thus, IFN-gamma R alpha binding does not result in a large conformational change in the AB loop as previously suggested. The structure also reveals the final six C-terminal amino acid residues of IFN-gamma SC1 (residues 253-258) that have not been observed in any other reported IFN-gamma structures. Despite binding to only one IFN-gamma R alpha, IFN-gamma SC1 is biologically active in cell proliferation, MHC class I induction, and anti-viral assays. This suggests that one domain of IFN-gamma is sufficient to recruit IFN-gamma R alpha and IFN-gamma R beta into a complex competent for eliciting biological activity. The current data are consistent with the main role of the IFN-gamma dimer being to decrease the dissociation constant of IFN-gamma for its cellular receptors.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Antiviral Agents / chemistry
  • Antiviral Agents / metabolism
  • Antiviral Agents / pharmacology
  • Binding Sites
  • Calorimetry
  • Cell Division / drug effects
  • Cell Line
  • Crystallization
  • Crystallography, X-Ray
  • Dimerization
  • Histocompatibility Antigens Class I / metabolism
  • Humans
  • Interferon gamma Receptor
  • Interferon-gamma / chemistry*
  • Interferon-gamma / genetics
  • Interferon-gamma / metabolism*
  • Interferon-gamma / pharmacology
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation / genetics*
  • Protein Binding
  • Protein Engineering*
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Receptors, Interferon / chemistry
  • Receptors, Interferon / metabolism
  • Static Electricity
  • Thermodynamics
  • Up-Regulation / drug effects

Substances

  • Antiviral Agents
  • Histocompatibility Antigens Class I
  • Receptors, Interferon
  • Interferon-gamma

Associated data

  • PDB/1EUK