Mapping the SF2/ASF binding sites in the bovine growth hormone exonic splicing enhancer

J Biol Chem. 2000 Sep 15;275(37):29170-7. doi: 10.1074/jbc.M001126200.

Abstract

Splicing of the last intron (intron D) of the bovine growth hormone pre-mRNA requires the presence of a downstream exonic splicing enhancer (ESE). This enhancer is contained within a 115-nucleotide FspI-PvuII (FP) fragment located in the middle of the last exon (exon 5). Previous work showed that the splicing factor SF2/ASF binds to this FP region and stimulates splicing of intron D in vitro. However, the precise sequences recognized by SF2/ASF within the FP region had not been determined. Here we used multiple strategies to map the SF2/ASF binding sites and determine their importance for ESE function. Taking advantage of the fact that SF2/ASF ultraviolet (UV) cross-links specifically to RNA containing the FP sequence, we first mapped a major SF2/ASF binding site by UV cross-linking and reverse transcription. This strategy identified a 29-nucleotide SF2/ASF binding region in the middle of the FP sequence containing the 7-nucleotide purine-rich motif described previously. Interestingly, this binding region is neither sufficient, nor absolutely required for SF2/ASF-mediated splicing, suggesting that additional SF2/ASF binding sites are present. The location of these additional sites was determined by electrophoretic mobility shift analysis of various subfragments of the FP sequence. Antisense 2'-O-methyl oligoribonucleotides complementary to selected SF2/ASF binding sites block bovine growth hormone intron D splicing. Thus, multiple SF2/ASF binding sites within the exonic splicing enhancer contribute to maximal enhancer activity.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Binding Sites
  • Cattle
  • Enhancer Elements, Genetic*
  • Exons*
  • Growth Hormone / genetics*
  • HeLa Cells
  • Heterogeneous-Nuclear Ribonucleoproteins
  • Humans
  • Introns
  • Nuclear Proteins / metabolism*
  • RNA Precursors / metabolism
  • RNA Splicing*
  • RNA-Binding Proteins
  • Ribonucleoproteins / metabolism
  • Serine-Arginine Splicing Factors

Substances

  • Heterogeneous-Nuclear Ribonucleoproteins
  • Nuclear Proteins
  • RNA Precursors
  • RNA-Binding Proteins
  • Ribonucleoproteins
  • Serine-Arginine Splicing Factors
  • Growth Hormone