Nonsense-mediated decay mutants do not affect programmed -1 frameshifting

RNA. 2000 Jul;6(7):952-61. doi: 10.1017/s1355838200000443.

Abstract

Sequences in certain mRNAs program the ribosome to undergo a noncanonical translation event, translational frameshifting, translational hopping, or termination readthrough. These sequences are termed recoding sites, because they cause the ribosome to change temporarily its coding rules. Cis and trans-acting factors sensitively modulate the efficiency of recoding events. In an attempt to quantitate the effect of these factors we have developed a dual-reporter vector using the lacZ and luc genes to directly measure recoding efficiency. We were able to confirm the effect of several factors that modulate frameshift or readthrough efficiency at a variety of sites. Surprisingly, we were not able to confirm that the complex of factors termed the surveillance complex regulates translational frameshifting. This complex regulates degradation of nonsense codon-containing mRNAs and we confirm that it also affects the efficiency of nonsense suppression. Our data suggest that the surveillance complex is not a general regulator of translational accuracy, but that its role is closely tied to the translational termination and initiation processes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Codon
  • Escherichia coli / metabolism
  • Frameshift Mutation*
  • Genes, Reporter
  • Molecular Sequence Data
  • Mutation*
  • Plasmids
  • Protein Biosynthesis*
  • Saccharomyces cerevisiae / genetics
  • Transcriptional Activation

Substances

  • Codon