Relaxation complexes of poasmid DNA and protein. III. Association of protein with the 5' terminus of the broken DNA strand in the relaxed complex of plasmid ColE1

J Biol Chem. 1975 Nov 25;250(22):8796-803.

Abstract

The location of the protein in the open circular DNA form of the ColE1 DNA-protein relaxation complex, induced by treatment with sodium dodecyl sulfate, has been studied using several enzymes of DNA metabolism. Escherichia coli exonucleases I and III are able to degrade extensively the nicked strand of the relaxed complex from the 3' end. DNA polymerase I can initiate synthesis using the relaxed complex as template-primer and specifically extends the 3' end of the nicked strand. The 5' end of the sodium dodecyl sulfate-relaxed complex, however, is blocked to the 5'-3' hydrolitic action T7 exonuclease. This block remains after trypsin treatment of the sodium dodecyl sulfate-relaxed complex but is removed by Pronase treatment. T4 DNA ligase is unable to seal either the sodium dodecyl sulfate-relaxed complex or the Pronase-treated relaxed complex even after pretreatment of the relaxed complex with T4 DNA polymerase and polynucleotide kinase. However, pretreatment with DNA polymerase I and the four deoxyribonucleoside triphosphates facilitates ligase closure of the Pronase-treated relaxed complex but not the sodium dodecyl sulfate-relaxed complex. These studies indicate that the protein in the relaxed ColE1 complex is located at or near the 5' end of the nicked strand.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacterial Proteins*
  • Binding Sites
  • Centrifugation, Density Gradient
  • DNA Nucleotidyltransferases
  • DNA, Bacterial*
  • DNA, Circular
  • Deoxyribonucleases
  • Escherichia coli / analysis*
  • Escherichia coli / enzymology
  • Exonucleases
  • Macromolecular Substances
  • Nucleic Acid Conformation
  • Operon*
  • Polynucleotide Ligases
  • Pronase
  • Protein Binding
  • Protein Conformation
  • Trypsin

Substances

  • Bacterial Proteins
  • DNA, Bacterial
  • DNA, Circular
  • Macromolecular Substances
  • DNA Nucleotidyltransferases
  • Deoxyribonucleases
  • Exonucleases
  • Trypsin
  • Pronase
  • Polynucleotide Ligases