Identification of a novel cytokine response element in the human IFN regulatory factor-1 gene promoter

J Immunol. 2000 Oct 1;165(7):3907-16. doi: 10.4049/jimmunol.165.7.3907.

Abstract

The present study investigates the regulatory mechanisms involved in the cooperation between IFN-gamma and TNF-alpha to promote transcription from IFN regulatory factor-1 (IRF-1). A transient transfection analysis revealed that the region between -218 and -144, where +1 is the transcription start site, as well as previously reported downstream elements, ppkappaB and IFN-gamma activation site/kappaB, were required for the optimal response to the two cytokines. A subsequent DNase I footprint analysis showed that the region between -171 and -144 was inducibly protected with stimulation by TNF-alpha, and this protection was significantly enhanced with the combination of IFN-gamma and TNF-alpha. In an EMSA with the protected region as a probe, a TNF-alpha-inducible complex (C1) and an IFN-gamma-inducible complex (C2), but no synergy-specific DNA-protein complexes, were recognized. The C1 complex consisted of a pre-existing factor (p65/p50), whereas the C2 complex consisted of a newly synthesized IRF-1-related factor. A methylation interference assay revealed the critical G residues (from -167 to -151) for the DNA-protein complex formation specific to the cytokine response, and within this region the novel kappaB sequence, the promoter distal kappaB (pdkappaB) element (5'-GGGGAAG TAC-3'), was identified. Because the base substitutions over the pdkappaB region (from -171 to -144) affected not only the TNF-alpha-response but also that of IFN-gamma, this region might contribute to the cooperative action of the NF-kappaB subunits with the IRF-1-related factor. Finally, we demonstrated that none of the cis-acting elements, ppkappaB, pdkappaB, or IFN-gamma activation site/kappaB, is dispensable for the optimal synergism in response to IFN-gamma and TNF-alpha.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adjuvants, Immunologic / physiology
  • Binding Sites / genetics
  • Binding Sites / immunology
  • Cells, Cultured
  • Cytokines / physiology*
  • DNA-Binding Proteins / analysis
  • DNA-Binding Proteins / biosynthesis
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / isolation & purification
  • DNA-Binding Proteins / metabolism
  • Gene Expression Regulation / immunology
  • Humans
  • Interferon Regulatory Factor-1
  • Interferon-gamma / metabolism
  • Interferon-gamma / physiology
  • K562 Cells
  • NF-kappa B / biosynthesis
  • NF-kappa B / isolation & purification
  • NF-kappa B / metabolism
  • NF-kappa B p50 Subunit
  • Phosphoproteins / analysis
  • Phosphoproteins / genetics*
  • Promoter Regions, Genetic / immunology*
  • Response Elements / immunology*
  • Transcription Factor RelA
  • Transcription Factors / biosynthesis
  • Transcription Factors / metabolism
  • Transcription, Genetic / immunology
  • Tumor Necrosis Factor-alpha / physiology
  • U937 Cells

Substances

  • Adjuvants, Immunologic
  • Cytokines
  • DNA-Binding Proteins
  • IRF1 protein, human
  • Interferon Regulatory Factor-1
  • NF-kappa B
  • NF-kappa B p50 Subunit
  • Phosphoproteins
  • Transcription Factor RelA
  • Transcription Factors
  • Tumor Necrosis Factor-alpha
  • Interferon-gamma