Potentiating AZT activation: structures of wild-type and mutant human thymidylate kinase suggest reasons for the mutants' improved kinetics with the HIV prodrug metabolite AZTMP

J Mol Biol. 2000 Nov 17;304(1):43-53. doi: 10.1006/jmbi.2000.4175.

Abstract

The 60-fold reduced phosphorylation rate of azidothymidine (AZT) monophosphate (AZTMP), the partially activated AZT metabolite, by human thymidylate kinase (TMPK) severely limits the efficacy of this anti-HIV prodrug. Crystal structures of different TMPK nucleotide complexes indicate that steric hindrance by the azido group of AZTMP prevents formation of the catalytically active closed conformation of the P-loop of TMPK. The F105Y mutant and a chimeric mutant that contains sequences of the human and Escherichia coli enzyme phosphorylate AZTMP 20-fold faster than the wild-type enzyme. The structural basis of the increased activity is assigned to stabilization of the closed P-loop conformation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-HIV Agents / metabolism*
  • Binding Sites
  • Catalysis
  • Crystallography, X-Ray
  • Dideoxynucleotides
  • Enzyme Stability
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Humans
  • Kinetics
  • Models, Molecular
  • Mutation / genetics*
  • Nucleoside-Phosphate Kinase / chemistry*
  • Nucleoside-Phosphate Kinase / genetics
  • Nucleoside-Phosphate Kinase / metabolism*
  • Nucleotides / metabolism
  • Phosphorylation
  • Prodrugs / metabolism*
  • Protein Binding
  • Protein Conformation
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / metabolism
  • Thymine Nucleotides / metabolism*
  • Zidovudine / analogs & derivatives*
  • Zidovudine / metabolism*

Substances

  • Anti-HIV Agents
  • Dideoxynucleotides
  • Nucleotides
  • Prodrugs
  • Recombinant Fusion Proteins
  • Thymine Nucleotides
  • 3'-azido-3'-deoxythymidine 5'phosphate
  • Zidovudine
  • Nucleoside-Phosphate Kinase
  • dTMP kinase