Identification of a novel putative Ran-binding protein and its close homologue

Biochem Biophys Res Commun. 2000 Nov 11;278(1):241-9. doi: 10.1006/bbrc.2000.3788.

Abstract

In the process of cloning genes at the breakpoint of t(5;14) (q34;q11), a recurring translocation in acute lymphoblastic leukemia, we isolated and characterized a novel gene at 5q34, and a close human homologue (66% amino acid identity) located at 8p11-12. The presence of an importin-beta N-terminal domain at their N-terminus, their size of approximately 110 kD, their nuclear localization and the identity of the homologue to a gene of a recently submitted RanGTP binding protein (RanBP16), suggest that its protein is a novel member of the importin-beta superfamily of nuclear transport receptors, therefore called RanBP17. Northern blot analysis of human tissues revealed a ubiquitous expression pattern of the RanBP16 gene and a very restricted expression pattern of the RanBP17 gene, showing high expression in testis and pancreas. Both genes are evolutionary conserved and show a high (99 and 94%) amino acid conservation with their murine counterparts and a striking similarity (40%) to a protein product of Caenorhabditis elegans (C35A5.8).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Blotting, Northern
  • Caenorhabditis elegans
  • Cell Nucleus / metabolism
  • Chromosomes, Human, Pair 5
  • Chromosomes, Human, Pair 8
  • Cloning, Molecular
  • DNA, Complementary / metabolism
  • Gene Library
  • HeLa Cells
  • Humans
  • In Situ Hybridization
  • Karyopherins
  • Male
  • Mice
  • Microscopy, Fluorescence
  • Molecular Sequence Data
  • Nuclear Proteins / metabolism
  • Pancreas / metabolism
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Software
  • Testis / metabolism
  • Tissue Distribution
  • ran GTP-Binding Protein / biosynthesis
  • ran GTP-Binding Protein / genetics*
  • ran GTP-Binding Protein / metabolism*

Substances

  • DNA, Complementary
  • Karyopherins
  • Nuclear Proteins
  • RanGTP-binding protein 16
  • RanGTP-binding protein 17
  • ran-binding protein 1
  • ran GTP-Binding Protein

Associated data

  • GENBANK/AJ271458
  • GENBANK/AJ271459
  • GENBANK/AJ297360