Crystal structure of the Xrcc4 DNA repair protein and implications for end joining

EMBO J. 2000 Nov 15;19(22):5962-70. doi: 10.1093/emboj/19.22.5962.

Abstract

XRCC4 is essential for carrying out non-homologous DNA end joining (NHEJ) in all eukaryotes and, in particular, V(D)J recombination in vertebrates. Xrcc4 protein forms a complex with DNA ligase IV that rejoins two DNA ends in the last step of V(D)J recombination and NHEJ to repair double strand breaks. XRCC4-defective cells are extremely sensitive to ionizing radiation, and disruption of the XRCC4 gene results in embryonic lethality in mice. Here we report the crystal structure of a functional fragment of Xrcc4 at 2.7 A resolution. Xrcc4 protein forms a strikingly elongated dumb-bell-like tetramer. Each of the N-terminal globular head domains consists of a beta-sandwich and a potentially DNA-binding helix- turn-helix motif. The C-terminal stalk comprising a single alpha-helix >120 A in length is partly incorporated into a four-helix bundle in the Xrcc4 tetramer and partly involved in interacting with ligase IV. The Xrcc4 structure suggests a possible mode of coupling ligase IV association with DNA binding for effective ligation of DNA ends.

Publication types

  • Comparative Study

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Bacterial Proteins / chemistry
  • Binding Sites
  • Cell Cycle Proteins / chemistry
  • Crystallization
  • Crystallography, X-Ray
  • DNA / chemistry
  • DNA / metabolism
  • DNA Ligase ATP
  • DNA Ligases / chemistry
  • DNA Ligases / metabolism
  • DNA Repair*
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Dimerization
  • Humans
  • Macromolecular Substances
  • Mice
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Structure, Quaternary
  • Saccharomyces cerevisiae / genetics
  • Sequence Homology, Amino Acid

Substances

  • Bacterial Proteins
  • Cell Cycle Proteins
  • DNA-Binding Proteins
  • DNL4 protein, S cerevisiae
  • LIG4 protein, human
  • Macromolecular Substances
  • SMC protein, Bacteria
  • XRCC4 protein, human
  • DNA
  • DNA Ligases
  • DNA Ligase ATP