Molecular basis for P-site inhibition of adenylyl cyclase

Biochemistry. 2000 Nov 28;39(47):14464-71. doi: 10.1021/bi0015562.


P-site inhibitors are adenosine and adenine nucleotide analogues that inhibit adenylyl cyclase, the effector enzyme that catalyzes the synthesis of cyclic AMP from ATP. Some of these inhibitors may represent physiological regulators of adenylyl cyclase, and the most potent may ultimately serve as useful therapeutic agents. Described here are crystal structures of the catalytic core of adenylyl cyclase complexed with two such P-site inhibitors, 2'-deoxyadenosine 3'-monophosphate (2'-d-3'-AMP) and 2',5'-dideoxyadenosine 3'-triphosphate (2',5'-dd-3'-ATP). Both inhibitors bind in the active site yet exhibit non- or uncompetitive patterns of inhibition. While most P-site inhibitors require pyrophosphate (PP(i)) as a coinhibitor, 2',5'-dd-3'-ATP is a potent inhibitor by itself. The crystal structure reveals that this inhibitor exhibits two binding modes: one with the nucleoside moiety bound to the nucleoside binding pocket of the enzyme and the other with the beta and gamma phosphates bound to the pyrophosphate site of the 2'-d-3'-AMP.PP(i) complex. A single metal binding site is observed in the complex with 2'-d-3'-AMP, whereas two are observed in the complex with 2', 5'-dd-3'-ATP. Even though P-site inhibitors are typically 10 times more potent in the presence of Mn(2+), the electron density maps reveal no inherent preference of either metal site for Mn(2+) over Mg(2+). 2',5'-dd-3'-ATP binds to the catalytic core of adenylyl cyclase with a K(d) of 2.4 microM in the presence of Mg(2+) and 0.2 microM in the presence of Mn(2+). Pyrophosphate does not compete with 2',5'-dd-3'-ATP and enhances inhibition.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenylyl Cyclase Inhibitors*
  • Adenylyl Cyclases / chemistry*
  • Animals
  • Binding, Competitive
  • Cattle
  • Crystallization
  • Crystallography, X-Ray
  • Deoxyadenine Nucleotides / chemistry
  • Dideoxynucleotides
  • Dogs
  • Enzyme Inhibitors / chemistry*
  • Macromolecular Substances
  • Magnesium / chemistry
  • Manganese / chemistry
  • Models, Molecular
  • Oligonucleotides / chemistry
  • Polyphosphates / chemistry
  • Rats
  • Solubility


  • Adenylyl Cyclase Inhibitors
  • Deoxyadenine Nucleotides
  • Dideoxynucleotides
  • Enzyme Inhibitors
  • Macromolecular Substances
  • Oligonucleotides
  • Polyphosphates
  • 2'-deoxy-3'-adenosine monophosphate
  • 2',3'-dideoxyadenosine triphosphate
  • Manganese
  • (2'-5')-3'-deoxyadenosine triphosphate-3'-deoxyadenosine monophosphate
  • Adenylyl Cyclases
  • Magnesium

Associated data

  • PDB/1CS4
  • PDB/1CUL