Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2000 Dec 14;408(6814):823-6.
doi: 10.1038/35048507.

Sequence and Analysis of Chromosome 5 of the Plant Arabidopsis Thaliana

S Tabata  1 T KanekoY NakamuraH KotaniT KatoE AsamizuN MiyajimaS SasamotoT KimuraT HosouchiK KawashimaM KoharaM MatsumotoA MatsunoA MurakiS NakayamaN NakazakiK NaruoS OkumuraS ShinpoC TakeuchiT WadaA WatanabeM YamadaM YasudaS SatoM de la BastideE HuangL SpiegelL GnojA O'ShaughnessyR PrestonK HabermannJ MurrayD JohnsonT RohlfingJ NelsonT StonekingK PepinJ SpiethM SekhonJ ArmstrongM BeckerE BelterH CordumM CordesL CourtneyW CourtneyM DanteH DuJ EdwardsJ FrymanB HaakensenE LamarP LatreilleS LeonardR MeyerE MulvaneyP OzerskyA RileyC StrowmattC Wagner-McPhersonA WollamM YoakumM BellN DedhiaL ParnellR ShahM RodriguezL H SeeD VilJ BakerK KirchoffK TothL KingA BahretB MillerM MarraR MartienssenW R McCombieR K WilsonG MurphyI BancroftG VolckaertR WambuttA DüsterhöftW StiekemaT PohlK D EntianN TerrynN HartleyE BentS JohnsonS A LanghamB McCullaghJ RobbenB GrymonprezW ZimmermannU RamspergerH WedlerK BalkeE WedlerS PetersM van StaverenW DirkseP MooijmanR K LankhorstT WeitzeneggerG BotheM RoseJ HaufS BerneiserS HempelM FeldpauschS LamberthR VillarroelJ GielenW ArdilesO BentsK LemckeG KolesovK MayerS RuddH SchoofC SchuellerP ZaccariaH W MewesM BevanP FranszKazusa DNA Research InstituteCold Spring Harbor and Washington University in St Louis Sequencing ConsortiumEuropean Union Arabidopsis Genome Sequencing Consortium
Affiliations

Sequence and Analysis of Chromosome 5 of the Plant Arabidopsis Thaliana

S Tabata et al. Nature. .

Abstract

The genome of the model plant Arabidopsis thaliana has been sequenced by an international collaboration, The Arabidopsis Genome Initiative. Here we report the complete sequence of chromosome 5. This chromosome is 26 megabases long; it is the second largest Arabidopsis chromosome and represents 21% of the sequenced regions of the genome. The sequence of chromosomes 2 and 4 have been reported previously and that of chromosomes 1 and 3, together with an analysis of the complete genome sequence, are reported in this issue. Analysis of the sequence of chromosome 5 yields further insights into centromere structure and the sequence determinants of heterochromatin condensation. The 5,874 genes encoded on chromosome 5 reveal several new functions in plants, and the patterns of gene organization provide insights into the mechanisms and extent of genome evolution in plants.

Similar articles

  • Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.
    Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blöcker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdomènech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Quétier F, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, Löhnert TH, Nordsiek G, Reichelt J, Scharfe M, Schön O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenwälder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse AC, Alcaraz JP, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes HW, Mayer KF, Kaul S, Town CD, Koo HL, Tallon LJ, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii CY, Shea TP, Creasy TH, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill JE, Feldblyum TV, Preuss D, Lin X, Nierman WC, Salzberg SL, White O, Venter JC, Fraser CM, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S; European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute. Salanoubat M, et al. Nature. 2000 Dec 14;408(6814):820-2. doi: 10.1038/35048706. Nature. 2000. PMID: 11130713
  • Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
    Mayer K, Schüller C, Wambutt R, Murphy G, Volckaert G, Pohl T, Düsterhöft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, Müller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham SA, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang YJ, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, Kötter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream MA, Lyne M, Benes V, Rechmann S, Borkova D, Blöcker H, Scharfe M, Grimm M, Löhnert TH, Dose S, de Haan M, Maarse A, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, Mündlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes HW, Stocker S, Zaccaria P, Bevan M, Wilson RK, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby IK, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie WR. Mayer K, et al. Nature. 1999 Dec 16;402(6763):769-77. doi: 10.1038/47134. Nature. 1999. PMID: 10617198
  • Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
    Lin X, Kaul S, Rounsley S, Shea TP, Benito MI, Town CD, Fujii CY, Mason T, Bowman CL, Barnstead M, Feldblyum TV, Buell CR, Ketchum KA, Lee J, Ronning CM, Koo HL, Moffat KS, Cronin LA, Shen M, Pai G, Van Aken S, Umayam L, Tallon LJ, Gill JE, Adams MD, Carrera AJ, Creasy TH, Goodman HM, Somerville CR, Copenhaver GP, Preuss D, Nierman WC, White O, Eisen JA, Salzberg SL, Fraser CM, Venter JC. Lin X, et al. Nature. 1999 Dec 16;402(6763):761-8. doi: 10.1038/45471. Nature. 1999. PMID: 10617197
  • Weeding out the genes: the Arabidopsis genome project.
    Martienssen RA. Martienssen RA. Funct Integr Genomics. 2000 May;1(1):2-11. doi: 10.1007/s101420000006. Funct Integr Genomics. 2000. PMID: 11793217 Review.
  • Chromosome landmarks as tools to study the genome of Arabidopsis thaliana.
    Siroky J. Siroky J. Cytogenet Genome Res. 2008;120(3-4):202-9. doi: 10.1159/000121068. Epub 2008 May 22. Cytogenet Genome Res. 2008. PMID: 18504348 Review.
See all similar articles

Cited by 50 articles

See all "Cited by" articles

Publication types

LinkOut - more resources

Feedback