Identification of GRY-RBP as an apolipoprotein B RNA-binding protein that interacts with both apobec-1 and apobec-1 complementation factor to modulate C to U editing

J Biol Chem. 2001 Mar 30;276(13):10272-83. doi: 10.1074/jbc.M006435200. Epub 2000 Dec 27.

Abstract

C to U editing of apolipoprotein B (apoB) mRNA involves the interaction of a multicomponent editing enzyme complex with a requisite RNA sequence embedded within an AU-rich context. This enzyme complex includes apobec-1, an RNA-specific cytidine deaminase, and apobec-1 complementation factor (ACF), a novel 65-kDa RNA-binding protein, that together represent the minimal core of the editing enzyme complex. The precise composition of the holo-enzyme, however, remains unknown. We have previously isolated an enriched fraction of S100 extracts, prepared from chicken intestinal cells, that displays apoB RNA binding and which, following supplementation with apobec-1, permits efficient C to U editing. Peptide sequencing of this most active fraction reveals the presence of ACF as well as GRY-RBP, an RNA-binding protein with approximately 50% homology to ACF. GRY-RBP was independently isolated from a two-hybrid screen of chicken intestinal cDNA. GRY-RBP binds to ACF, to apobec-1, and also binds apoB RNA. Experiments using recombinant proteins demonstrate that GRY-RBP binds to ACF and inhibits both the binding of ACF to apoB RNA and C to U RNA editing. This competitive inhibition is rescued by addition of ACF, suggesting that GRY-RBP binds to and sequesters ACF. As further evidence of the role of GRY-RBP, rat hepatoma cells treated with an antisense oligonucleotide to GRY-RBP demonstrated an increase in C to U editing of endogenous apoB RNA. ACF and GRY-RBP colocalize in the nucleus of transfected cells and, in cotransfection experiments with apobec-1, each appears to colocalize in a predominantly nuclear distribution. Taken together, the results indicate that GRY-RBP is a member of the ACF gene family that may function to modulate C to U RNA editing through binding either to ACF or to apobec-1 or, alternatively, to the target RNA itself.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • AICDA (Activation-Induced Cytidine Deaminase)
  • APOBEC-1 Deaminase
  • Amino Acid Sequence
  • Animals
  • Apolipoproteins B / metabolism*
  • Base Sequence
  • Blotting, Western
  • COS Cells
  • Carcinoma, Hepatocellular / metabolism
  • Cell Line
  • Chickens
  • Cloning, Molecular
  • Cytidine Deaminase / genetics
  • Cytidine Deaminase / metabolism*
  • DNA, Complementary / metabolism
  • Dose-Response Relationship, Drug
  • Electrophoresis, Polyacrylamide Gel
  • Heterogeneous-Nuclear Ribonucleoproteins*
  • Humans
  • Liver Neoplasms / metabolism
  • Microscopy, Fluorescence
  • Molecular Sequence Data
  • Oligonucleotides, Antisense / metabolism
  • Peptides / chemistry
  • Phylogeny
  • Precipitin Tests
  • Protein Binding
  • Protein Isoforms
  • RNA Editing*
  • RNA-Binding Proteins / chemistry*
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism*
  • Rats
  • Recombinant Proteins / metabolism
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Transfection
  • Tumor Cells, Cultured
  • Two-Hybrid System Techniques
  • Ultraviolet Rays

Substances

  • Apolipoproteins B
  • DNA, Complementary
  • Heterogeneous-Nuclear Ribonucleoproteins
  • Oligonucleotides, Antisense
  • Peptides
  • Protein Isoforms
  • RNA-Binding Proteins
  • Recombinant Proteins
  • SYNCRIP protein, human
  • AICDA (Activation-Induced Cytidine Deaminase)
  • APOBEC-1 Deaminase
  • APOBEC1 protein, human
  • Apobec1 protein, rat
  • Cytidine Deaminase