VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

Bioinformatics. 2000 Nov;16(11):1048-9. doi: 10.1093/bioinformatics/16.11.1048.

Abstract

The program varsplic.pl uses information present in the SWISS-PROT and TrEMBL databases to create new records for alternatively spliced isoforms. These new records can be used in similarity searches.

Availability: The program is available at ftp://ftp.ebi.ac.uk/pub/software/swissprot/, together with regularly updated output files.

Contact: pkersey@ebi.ac.uk

MeSH terms

  • Alternative Splicing*
  • Animals
  • Computational Biology
  • Databases, Factual*
  • Humans
  • Internet
  • Protein Isoforms / genetics
  • Proteins / genetics*
  • Software*

Substances

  • Protein Isoforms
  • Proteins