Dynamic light-scattering analysis of full-length human RPA14/32 dimer: purification, crystallization and self-association

Acta Crystallogr D Biol Crystallogr. 2001 Feb;57(Pt 2):254-9. doi: 10.1107/s0907444900015225.

Abstract

Replication protein A (RPA) is a single-stranded DNA-binding protein involved in all aspects of eukaryotic DNA metabolism. A soluble heterodimeric form of RPA is composed of 14 and 32 kDa subunits (RPA14/32). Dynamic light-scattering (DLS) analysis was used to improve the purification, stabilization and crystallization of RPA14/32. Increasing the concentration of reducing agent in the last stage of purification diminished the size of a secondary peak in the anion-exchange chromatograph and promoted a single species in solution. This resulted in decreased polydispersity in the purified protein and enhanced the crystallization time from 9-12 months to 6 d. With this homogeneous preparation, the reversible association of RPA14/32 into a dimer of dimers was demonstrated by DLS. Four different crystal forms of RPA14/32 were obtained for structure determination and complete diffraction data were collected using synchrotron radiation for three of them. Data to 2.4 A resolution was collected from hexagonal crystals (P3(2) or P3(1); a = b = 63.0, c = 272.6 A) and to 2.2 and 1.9 A resolution from two orthorhombic crystal forms (both P2(1)2(1)2(1); form I, a = 61.4, b = 75.2, c = 131.6 A; form II, a = 81.8, b = 140.4, c = 173.1 A).

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Crystallization
  • DNA-Binding Proteins / chemistry*
  • Dimerization
  • Humans
  • Light
  • Protein Subunits
  • Proteins / chemistry*
  • RNA Polymerase I
  • Recombinant Proteins / chemistry
  • Replication Protein A
  • Saccharomyces cerevisiae Proteins*
  • Scattering, Radiation

Substances

  • DNA-Binding Proteins
  • Protein Subunits
  • Proteins
  • RPA1 protein, human
  • RPA14 protein, S cerevisiae
  • Recombinant Proteins
  • Replication Protein A
  • Saccharomyces cerevisiae Proteins
  • RNA Polymerase I