The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems

EMBO Rep. 2000 Jul;1(1):18-23. doi: 10.1093/embo-reports/kvd001.

Abstract

The G x U wobble base pair is a fundamental unit of RNA secondary structure that is present in nearly every class of RNA from organisms of all three phylogenetic domains. It has comparable thermodynamic stability to Watson-Crick base pairs and is nearly isomorphic to them. Therefore, it often substitutes for G x C or A x U base pairs. The G x U wobble base pair also has unique chemical, structural, dynamic and ligand-binding properties, which can only be partially mimicked by Watson-Crick base pairs or other mispairs. These features mark sites containing G x U pairs for recognition by proteins and other RNAs and allow the wobble pair to play essential functional roles in a remarkably wide range of biological processes.

Publication types

  • Review

MeSH terms

  • Base Pairing / genetics*
  • Guanine / chemistry*
  • Hydrogen Bonding
  • Models, Molecular
  • Molecular Structure
  • Nucleic Acid Conformation*
  • RNA / chemistry*
  • RNA / metabolism
  • Thermodynamics
  • Uracil / chemistry*

Substances

  • Uracil
  • Guanine
  • RNA