The kinetics of transposable element autoregulation

Genetica. 2000;108(3):229-37. doi: 10.1023/a:1004172703790.

Abstract

Kinetic modeling of the self-regulatory mechanisms of transposable elements (TEs) involving interactions of one or a few gene products makes predictions that are often at odds with observed results. In particular, explanations of TE autorepression at high copy number that invoke a decrease in number of active monomers through dimerization, amyloidization, and protein-mRNA binding to create an inactive state are not supported by analysis of the corresponding kinetic models. This is also true for similar mRNA-mRNA binding models. Self-repression in mariner as well as other TEs can, however, be explained by a host-independent model in which inactive dimers compete with monomers for TE binding sites at the ends of the element. This model would also allow heterodimer poisoning to down-regulate transposition in the presence of divergent nonautonomous elements, since nondivergent monomers would be required at both TE ends for transposition.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • DNA Transposable Elements / genetics*
  • DNA Transposable Elements / physiology*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Drosophila melanogaster / genetics
  • Drosophila melanogaster / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Homeostasis
  • Kinetics
  • Models, Biological*
  • RNA Processing, Post-Transcriptional
  • RNA, Bacterial / genetics
  • RNA, Bacterial / metabolism
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Transposases

Substances

  • DNA Transposable Elements
  • DNA-Binding Proteins
  • RNA, Bacterial
  • RNA, Messenger
  • mariner transposases
  • Transposases