Viewing of complex molecules of ethidium bromide and plasmid DNA in solution by atomic force microscopy

Chem Pharm Bull (Tokyo). 2001 Apr;49(4):413-7. doi: 10.1248/cpb.49.413.

Abstract

Tertiary structure changes in plasmid DNA, induced by ethidium bromide intercalation, have been observed in aqueous solutions by the use of an atomic force microscope. A relaxed closed circular pBR322 molecule became a positively supercoiled complex on the drug binding. The supercoiling always resulted in an interwound (or a plectonemic) form, but never a solenoidal (or a toroidal) form. A quantitative analysis of the compactness of such supercoiled complexes has been carried out.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry*
  • DNA / ultrastructure*
  • Electrophoresis, Polyacrylamide Gel
  • Ethidium / chemistry*
  • Microscopy, Atomic Force
  • Nucleic Acid Conformation
  • Plasmids / chemistry*
  • Plasmids / ultrastructure*
  • Solutions
  • Spectrophotometry, Infrared

Substances

  • Solutions
  • DNA
  • Ethidium