Unnatural base pairs for specific transcription

Proc Natl Acad Sci U S A. 2001 Apr 24;98(9):4922-5. doi: 10.1073/pnas.091532698.

Abstract

An unnatural base pair of 2-amino-6-(N,N-dimethylamino)purine (designated as x) and pyridin-2-one (designated as y) has been developed for specific transcription. The ribonucleoside triphosphates of y and a modified y, 5-methylpyridin-2-one, are selectively incorporated into RNA opposite x in the templates by T7 RNA polymerase. In addition, the sequences of the DNA templates containing x can be confirmed by a dideoxynucleotide chain-terminator method supplemented with the deoxynucleoside triphosphate of y. The bulky dimethylamino group of x in the templates effectively eliminates noncognate pairing with the natural bases. These results enable RNA biosynthesis for the specific incorporation of unnatural nucleotides at the desired positions.

MeSH terms

  • Base Pairing / genetics*
  • Base Sequence
  • DNA / chemistry
  • DNA / genetics
  • DNA / metabolism
  • DNA-Directed RNA Polymerases / metabolism
  • Molecular Sequence Data
  • Purines / metabolism*
  • Pyridones / metabolism*
  • RNA / biosynthesis
  • Sequence Analysis, DNA
  • Templates, Genetic
  • Transcription, Genetic / genetics*
  • Viral Proteins

Substances

  • 2-amino-6-(N,N-dimethylamino)purine
  • Purines
  • Pyridones
  • Viral Proteins
  • RNA
  • DNA
  • bacteriophage T7 RNA polymerase
  • DNA-Directed RNA Polymerases