Glutamic acid 160 is the acid-base catalyst of beta-xylosidase from Bacillus stearothermophilus T-6: a family 39 glycoside hydrolase

FEBS Lett. 2001 Apr 20;495(1-2):115-9. doi: 10.1016/s0014-5793(01)02371-7.

Abstract

A beta-xylosidase from Bacillus stearothermophilus T-6 was cloned, overexpressed in Escherichia coli and purified to homogeneity. Based on sequence alignment, the enzyme belongs to family 39 glycoside hydrolases, which itself forms part of the wider GH-A clan. The conserved Glu160 was proposed as the acid-base catalyst. An E160A mutant was constructed and subjected to steady state and pre-steady state kinetic analysis together with azide rescue and pH activity profiles. The observed results support the assignment of Glu160 as the acid-base catalytic residue.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Azides / pharmacology
  • Binding Sites / drug effects
  • Binding Sites / physiology
  • Catalysis
  • Cloning, Molecular
  • Dose-Response Relationship, Drug
  • Escherichia coli / genetics
  • Geobacillus stearothermophilus / enzymology*
  • Glutamic Acid / genetics
  • Glutamic Acid / metabolism*
  • Glycosides / metabolism
  • Hydrolysis / drug effects
  • Molecular Sequence Data
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Substrate Specificity / physiology
  • Xylosidases / genetics*
  • Xylosidases / metabolism*

Substances

  • Azides
  • Glycosides
  • 4-nitrophenyl beta-D-xyloside
  • Glutamic Acid
  • Xylosidases
  • exo-1,4-beta-D-xylosidase

Associated data

  • GENBANK/AF098273