The overlap of Inr and TATA elements sets the use of alternative transcriptional start sites in the mouse galectin-1 gene promoter

Gene. 2001 May 2;268(1-2):215-23. doi: 10.1016/s0378-1119(01)00437-1.

Abstract

In the mouse gene encoding the protein galectin-1, transcription initiation at the +1 site is directed by a TATA box. Here we show that a consensus Inr element (TCCAGTT), which spans residues -34 to -28 and overlaps the TATA box, directs RNA initiation also from a previously uncharacterized site located at position -31. Upstream transcripts are polyadenylated and contribute to more than half of the galectin-1 mRNA population in all tissues analyzed. The promoter architecture is evolutionarily conserved to man, and galectin-1 mRNA size variants accumulate also in human HeLa cells. The 5' end terminus of the transcripts initiated at residue -31 is extremely GC-rich, and may fold into a relative stable hairpin which could influence translation and thus modulate the intracellular levels of galectin-1. The interval -63/+45 contains sufficient information to ensure RNA initiation from both -31 and +1 sites, and a Sp1 site spanning residues -57 to -48 is crucial for promoter functioning. The unusual overlap of core promoter elements suggests that RNA initiation from the -31 and the +1 sites may take place in a sequential manner.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3T3 Cells
  • Alternative Splicing*
  • Animals
  • Base Sequence
  • Galectin 1
  • Hemagglutinins / genetics*
  • Hemagglutinins / metabolism
  • Mice
  • Molecular Sequence Data
  • Promoter Regions, Genetic
  • RNA, Messenger
  • Regulatory Sequences, Nucleic Acid*
  • Ribonuclease T1 / genetics
  • Ribonuclease T1 / metabolism
  • TATA Box
  • Transcription, Genetic

Substances

  • Galectin 1
  • Hemagglutinins
  • RNA, Messenger
  • Ribonuclease T1