Oxaloacetate synthesis in the methanarchaeon Methanosarcina barkeri: pyruvate carboxylase genes and a putative Escherichia coli-type bifunctional biotin protein ligase gene (bpl/birA) exhibit a unique organization

J Bacteriol. 2001 Jun;183(12):3804-10. doi: 10.1128/JB.183.12.3804-3810.2001.

Abstract

Evidence is presented that, in Methanosarcina barkeri oxaloacetate synthesis, an essential and major CO(2) fixation reaction is catalyzed by an apparent alpha(4)beta(4)-type acetyl coenzyme A-independent pyruvate carboxylase (PYC), composed of 64.2-kDa biotinylated and 52.9-kDa ATP-binding subunits. The purified enzyme was most active at 70 degrees C, insensitive to aspartate and glutamate, mildly inhibited by alpha-ketoglutarate, and severely inhibited by ATP, ADP, and excess Mg(2+). It showed negative cooperativity towards bicarbonate at 70 degrees C but not at 37 degrees C. The organism expressed holo-PYC without an external supply of biotin and, thus, synthesized biotin. pycA, pycB, and a putative bpl gene formed a novel operon-like arrangement. Unlike other archaeal homologs, the putative biotin protein ligases (BPLs) of M. barkeri and the closely related euryarchaeon Archaeoglobus fulgidus appeared to be of the Escherichia coli-type (bifunctional, with two activities: BirA or a repressor of the biotin operon and BPL). We found the element Tyr(Phe)ProX(5)Phe(Tyr) to be fully conserved in biotin-dependent enzymes; it might function as the hinge for their "swinging arms."

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Carbon-Nitrogen Ligases / genetics*
  • Carbon-Nitrogen Ligases / metabolism
  • Cloning, Molecular
  • Conserved Sequence
  • Electrophoresis, Polyacrylamide Gel
  • Escherichia coli / genetics
  • Escherichia coli Proteins*
  • Genes, Bacterial*
  • Heating
  • Methanosarcina barkeri / enzymology
  • Methanosarcina barkeri / metabolism*
  • Molecular Sequence Data
  • Operon
  • Oxaloacetic Acid / metabolism*
  • Pyruvate Carboxylase / genetics
  • Pyruvate Carboxylase / metabolism*
  • Repressor Proteins*
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Transcription Factors*

Substances

  • Bacterial Proteins
  • Escherichia coli Proteins
  • Repressor Proteins
  • Transcription Factors
  • Oxaloacetic Acid
  • Carbon-Nitrogen Ligases
  • birA protein, E coli
  • Pyruvate Carboxylase

Associated data

  • GENBANK/AF317651