Supramolecular assembly and acid resistance of Helicobacter pylori urease

Nat Struct Biol. 2001 Jun;8(6):505-9. doi: 10.1038/88563.


Helicobacter pylori, an etiologic agent in a variety of gastroduodenal diseases, produces a large amount of urease, which is believed to neutralize gastric acid by producing ammonia for the survival of the bacteria. Up to 30% of the enzyme associates with the surface of intact cells upon lysis of neighboring bacteria. The role of the enzyme at the extracellular location has been a subject of controversy because the purified enzyme is irreversibly inactivated below pH 5. We have determined the crystal structure of H. pylori urease, which has a 1.1 MDa spherical assembly of 12 catalytic units with an outer diameter of approximately 160 A. Under physiologically relevant conditions, the activity of the enzyme remains unaffected down to pH 3. Activity assays under different conditions indicated that the cluster of the 12 active sites on the supramolecular assembly may be critical for the survival of the enzyme at low pH. The structure provides a novel example of a molecular assembly adapted for acid resistance that, together with the low Km value of the enzyme, is likely to enable the organism to inhabit the hostile niche.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Ammonia / metabolism
  • Binding Sites
  • Crystallography, X-Ray
  • Gastric Acid / metabolism*
  • Helicobacter pylori / enzymology*
  • Humans
  • Hydrogen-Ion Concentration
  • Hydroxamic Acids / pharmacology
  • Kinetics
  • Models, Molecular
  • Molecular Sequence Data
  • Peptic Ulcer / microbiology
  • Protein Structure, Quaternary
  • Sequence Alignment
  • Stomach / microbiology
  • Urease / antagonists & inhibitors
  • Urease / chemistry*
  • Urease / metabolism*


  • Hydroxamic Acids
  • acetohydroxamic acid
  • Ammonia
  • Urease

Associated data

  • PDB/1E9Y
  • PDB/1E9Z