Interchain hydrogen-bonding interactions may facilitate translocation of K+ ions across the potassium channel selectivity filter, as suggested by synthetic modeling chemistry

Proc Natl Acad Sci U S A. 2001 Aug 14;98(17):9478-83. doi: 10.1073/pnas.161257798.

Abstract

A 4-fold symmetric arrangement of TVGYG polypeptides forms the selectivity filter of the K+ channel from Streptomyces lividans (KcsA). We report the synthesis and properties of synthetic models for the filter, p-tert-butyl-calix[4]arene-(OCH(2)CO-XOBz)(4) (X = V, VG, VGY), 1-3. The first cation (Na+, K+) binds to the four -[OCH(2)CO]- units, a region devised to mimic the metal-binding site formed by the four T residues in KcsA. NMR studies reveal that cations and valine amide protons compete for the carbonyl oxygen atoms, converting NH(Val)...O=C hydrogen bonds to M+ ...O=C bonds (M+ = Na+ or K+). The strength of these interchain NH(Val)...O=C hydrogen bonds varies in the order 3 > 2 > 1. We propose that such interchain H-bonding may destabilize metal binding in the selectivity filter and thus help create the low energy barrier needed for rapid cation translocation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism*
  • Binding Sites
  • Bridged-Ring Compounds / chemical synthesis
  • Bridged-Ring Compounds / chemistry
  • Bridged-Ring Compounds / metabolism*
  • Calixarenes*
  • Cations / chemistry
  • Dipeptides / chemical synthesis
  • Dipeptides / chemistry
  • Dipeptides / metabolism*
  • Hydrogen Bonding*
  • Ion Transport*
  • Magnetic Resonance Spectroscopy
  • Models, Chemical*
  • Models, Molecular
  • Oligopeptides / chemical synthesis
  • Oligopeptides / chemistry
  • Oligopeptides / metabolism*
  • Peptide Fragments / chemistry
  • Potassium / chemistry
  • Potassium / metabolism*
  • Potassium Channels / chemistry
  • Potassium Channels / metabolism*
  • Protein Binding
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • Streptomyces / chemistry
  • Templates, Genetic
  • Valine / analogs & derivatives
  • Valine / chemical synthesis
  • Valine / chemistry
  • Valine / metabolism*

Substances

  • 4-tert-butylcalix(4)arene tetravaline benzyl ester
  • 4-tert-butylcalix(4)arene tetravaline-glycine benzyl ester
  • 4-tert-butylcalix(4)arene-tetravaline-glycine-tyrosine benzyl ester
  • Bacterial Proteins
  • Bridged-Ring Compounds
  • Cations
  • Dipeptides
  • Oligopeptides
  • Peptide Fragments
  • Potassium Channels
  • prokaryotic potassium channel
  • Calixarenes
  • Valine
  • Potassium