Dynamic DNA methylation change in the CpG island region of p15 during human myeloid development

J Clin Invest. 2001 Oct;108(8):1195-204. doi: 10.1172/JCI13030.

Abstract

We examined the kenetics of p15 methylation and expression during myeloid development. We treated human cord blood CD34+ cells with either GM-CSF alone or in combination with stem cell factor and followed methylation at this locus using bisulfite genomic sequencing. CD34+ cells were found to be either fully methylated or completely unmethylated at 27 CpG dinucleotide sites in exon 1 and at 18 CpG sites in the promoter region of the p15 gene. A time-course study showed that the percentage of the allelic methylation of p15 CpG island increased to approximately 50% to 60% until 7 days after cytokine stimulation, then decreased to less than 10% after 21 days. The methylation was also observed in bone marrow CD34+ cells exposed to GM-CSF. p15 expression varied inversely with methylation. Expression was negligible or at low levels until 14 days, after which it increased substantially. The frequency of myeloid colony-forming cells in the progeny decreased and myeloid-specific markers increased in the later stages. Based on our observations on cells grown with GM-CSF and 5-aza-2'-deoxycytidine, DNA methylation of the p15 promoter region CpG island appears to be associated with proliferation rather than differentiation of normal human myeloid progenitors.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Antigens, CD34 / metabolism
  • Base Sequence
  • Cell Cycle Proteins / genetics*
  • Cells, Cultured
  • Colony-Forming Units Assay
  • CpG Islands*
  • Cyclin-Dependent Kinase Inhibitor p15
  • Cyclin-Dependent Kinase Inhibitor p16 / genetics*
  • DNA / genetics
  • DNA Methylation*
  • Fetal Blood / cytology
  • Fetal Blood / drug effects
  • Fetal Blood / immunology
  • Fetal Blood / metabolism
  • Gene Expression
  • Genes, Tumor Suppressor
  • Granulocyte-Macrophage Colony-Stimulating Factor / pharmacology
  • Granulocytes / drug effects
  • Granulocytes / immunology
  • Granulocytes / metabolism
  • Hematopoiesis / genetics*
  • Hematopoiesis / physiology*
  • Hematopoietic Stem Cells / drug effects
  • Hematopoietic Stem Cells / immunology
  • Hematopoietic Stem Cells / metabolism
  • Humans
  • Kinetics
  • Macrophages / drug effects
  • Macrophages / immunology
  • Macrophages / metabolism
  • Molecular Sequence Data
  • Promoter Regions, Genetic
  • Stem Cell Factor / pharmacology
  • Tumor Suppressor Proteins*

Substances

  • Antigens, CD34
  • CDKN2B protein, human
  • Cell Cycle Proteins
  • Cyclin-Dependent Kinase Inhibitor p15
  • Cyclin-Dependent Kinase Inhibitor p16
  • Stem Cell Factor
  • Tumor Suppressor Proteins
  • Granulocyte-Macrophage Colony-Stimulating Factor
  • DNA