Mesocosms consisting of physically and biologically intact segments of natural communities are an ideal compromise between single species tests and ecosystem experiments in the assessment of sediment contamination. Therefore, large intact sediment cores, as mesocosms with naturally co-adapted communities, would allow sediment contamination to be assessed using the replicability and statistical power of laboratory techniques, while retaining much of the ecological realism of field studies. This study investigates the collection and maintenance of such cores, collected from an unimpacted site in Lake Erie. It demonstrates that box cores containing relatively undisturbed freshwater sediments can be brought back to the laboratory and maintained for up to 8 weeks with little change in the resident benthic fauna. Feeding the systems is not required, nor is it deleterious to the indigenous fauna.