Binding properties of a peptide derived from beta-lactamase inhibitory protein

Antimicrob Agents Chemother. 2001 Dec;45(12):3279-86. doi: 10.1128/AAC.45.12.3279-3286.2001.

Abstract

To overcome the antibiotic resistance mechanism mediated by beta-lactamases, small-molecule beta-lactamase inhibitors, such as clavulanic acid, have been used. This approach, however, has applied selective pressure for mutations that result in beta-lactamases no longer sensitive to beta-lactamase inhibitors. On the basis of the structure of beta-lactamase inhibitor protein (BLIP), novel peptide inhibitors of beta-lactamase have been constructed. BLIP is a 165-amino-acid protein that is a potent inhibitor of TEM-1 beta-lactamase (K(i) = 0.3 nM). The cocrystal structure of TEM-1 beta-lactamase and BLIP indicates that residues 46 to 51 of BLIP make critical interactions with the active site of TEM-1 beta-lactamase. A peptide containing this six-residue region of BLIP was found to retain sufficient binding energy to interact with TEM-1 beta-lactamase. Inhibition assays with the BLIP peptide reveal that, in addition to inhibiting TEM-1 beta-lactamase, the peptide also inhibits a class A beta-lactamase and a class C beta-lactamase that are not inhibited by BLIP. The crystal structures of class A and C beta-lactamases and two penicillin-binding proteins (PBPs) reveal that the enzymes have similar three-dimensional structures in the vicinity of the active site. This similarity suggests that the BLIP peptide inhibitor may have a broad range of activity that can be used to develop novel small-molecule inhibitors of various classes of beta-lactamases and PBPs.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism*
  • Cloning, Molecular
  • Enzyme Inhibitors / pharmacology*
  • Enzyme-Linked Immunosorbent Assay
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Genes, Bacterial / genetics
  • Isoenzymes / antagonists & inhibitors
  • Isoenzymes / metabolism
  • Mass Spectrometry
  • Models, Molecular
  • Peptides / chemical synthesis
  • Peptides / metabolism*
  • Peptides / pharmacology
  • Protein Binding
  • X-Ray Diffraction
  • beta-Lactamase Inhibitors*
  • beta-Lactamases / metabolism

Substances

  • Bacterial Proteins
  • Enzyme Inhibitors
  • Isoenzymes
  • Peptides
  • beta-Lactamase Inhibitors
  • beta-lactamase-inhibitor protein, Streptomyces
  • beta-Lactamases