Annotating the human proteome: the Human Proteome Survey Database (HumanPSD) and an in-depth target database for G protein-coupled receptors (GPCR-PD) from Incyte Genomics

Nucleic Acids Res. 2002 Jan 1;30(1):137-41. doi: 10.1093/nar/30.1.137.

Abstract

The Proteome Division of Incyte Genomics has released new volumes to the BioKnowledge Library to add human, mouse and rat protein information to its rich collection of model organism Proteome Databases. The Human Proteome Survey Database (HumanPSD) compiles the fundamental properties of more than 25 000 characterized mammalian proteins. HumanPSD includes clear, concise and current protein descriptions (Title Lines), the protein sequence, calculated physical properties, precomputed BLAST alignments, controlled-vocabulary protein properties and Gene Ontology terms, and a list of published references. Each report also contains expression data, Pfam domain information and an associated Mouse Mutant Phenotype section describing behavioral, physiological and cellular phenotypes for over 1500 mouse mutant phenotypes. GPCR-PD contains more than 3200 Protein Reports from the three mammalian species for G protein-coupled receptors, their protein ligands, associated G-proteins and their downstream signaling proteins. In addition to the features described above, each GPCR-PD Protein Report displays annotations of experimental findings from over 10 000 publications. These databases provide important new volumes of Proteome's BioKnowledge Library (http://www.incyte.com), integrating protein information from model organisms with the human proteome.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Databases, Protein*
  • Heterotrimeric GTP-Binding Proteins / metabolism*
  • Humans
  • Information Storage and Retrieval
  • Internet
  • Ligands
  • Mice
  • Mutation
  • Phenotype
  • Protein Structure, Tertiary
  • Proteome / chemistry
  • Proteome / genetics*
  • Proteome / physiology
  • Rats
  • Receptors, Cell Surface / chemistry
  • Receptors, Cell Surface / genetics*
  • Receptors, Cell Surface / physiology
  • Sequence Alignment
  • Signal Transduction
  • Vocabulary, Controlled

Substances

  • Ligands
  • Proteome
  • Receptors, Cell Surface
  • Heterotrimeric GTP-Binding Proteins