AraC-XylS Database: A Family of Positive Transcriptional Regulators in Bacteria

Nucleic Acids Res. 2002 Jan 1;30(1):318-21. doi: 10.1093/nar/30.1.318.

Abstract

The AraC-XylS database contains information about a family of positive transcriptional regulators broadly distributed in bacteria. This specific database focuses on protein sequences and on the biological and functional features of each of the proteins that belong to this family. Each entry provides information on the protein itself, the annotated protein sequence and, when the crystal is available, a comprehensive representation of its three-dimensional structure. The organization of the database is based on an exhaustive analysis of the scientific literature. The data are interconnected and linked with other databases. Multiple alignments of the members of the family, an extensive collection of references and a tutorial about the family provide additional information. The AraC-XylS database is accessible on the World Wide Web at http://www.AraC-XylS.org.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • AraC Transcription Factor
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / physiology
  • Computer Graphics
  • Conserved Sequence
  • DNA-Binding Proteins
  • Databases, Protein*
  • Forecasting
  • Imaging, Three-Dimensional
  • Information Storage and Retrieval
  • Internet
  • Protein Structure, Tertiary
  • Repressor Proteins / chemistry
  • Repressor Proteins / genetics*
  • Repressor Proteins / physiology
  • Sequence Alignment
  • Trans-Activators / chemistry
  • Trans-Activators / genetics*
  • Trans-Activators / physiology
  • Transcription Factors*
  • User-Computer Interface

Substances

  • AraC Transcription Factor
  • Bacterial Proteins
  • DNA-Binding Proteins
  • Repressor Proteins
  • Trans-Activators
  • Transcription Factors
  • XylS protein, Pseudomonas putida