Structure of Ocr from bacteriophage T7, a protein that mimics B-form DNA

Mol Cell. 2002 Jan;9(1):187-94. doi: 10.1016/s1097-2765(02)00435-5.

Abstract

We have solved, by X-ray crystallography to a resolution of 1.8 A, the structure of a protein capable of mimicking approximately 20 base pairs of B-form DNA. This ocr protein, encoded by gene 0.3 of bacteriophage T7, mimics the size and shape of a bent DNA molecule and the arrangement of negative charges along the phosphate backbone of B-form DNA. We also demonstrate that ocr is an efficient inhibitor in vivo of all known families of the complex type I DNA restriction enzymes. Using atomic force microscopy, we have also observed that type I enzymes induce a bend in DNA of similar magnitude to the bend in the ocr molecule. This first structure of an antirestriction protein demonstrates the construction of structural mimetics of long segments of B-form DNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage T7 / chemistry*
  • Crystallography, X-Ray
  • DNA / chemistry
  • Microscopy, Atomic Force
  • Nucleic Acid Conformation
  • Protein Conformation
  • Viral Proteins / chemistry*

Substances

  • Ocr protein, bacteriophage T7
  • Viral Proteins
  • DNA