Proton shuttle in green fluorescent protein studied by dynamic simulations

Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2778-81. doi: 10.1073/pnas.052520799.

Abstract

As a direct simulation of a multistep proton transfer reaction involving protein residues, the proton relay shuttle between A and I forms of green fluorescent protein (GFP) is simulated in atomic detail by using a special molecular dynamics simulation technique. Electronic excitation of neutral chromophore in wild-type GFP is generally followed by excited-state proton transfer to a nearby glutamic acid residue via a water molecule and a serine residue. Here we show that the second and third transfer steps occur ultrafast on time scales of several tens of femtoseconds. Proton back-shuttle in the ground state is slower and occurs in a different sequence of events. The simulations provide atomic models of various intermediates and yield realistic rate constants for proton transfer events. In particular, we argue that the I form observed spectroscopically under equilibrium conditions may differ from the I form observed as a fast intermediate by an anti to syn rotation of the carboxyl proton of neutral Glu-222.

MeSH terms

  • Computer Simulation*
  • Green Fluorescent Proteins
  • Luminescent Proteins / chemistry*
  • Models, Molecular*
  • Protein Structure, Quaternary
  • Protons

Substances

  • Luminescent Proteins
  • Protons
  • Green Fluorescent Proteins