Identification of a NF-kappaB site in the negative regulatory element (epsilon-NRAII) of human epsilon-globin gene and its binding protein NF-kappaB p50 in the nuclei of K562 cells

Cell Res. 2002 Mar;12(1):79-82. doi: 10.1038/sj.cr.7290113.

Abstract

The developmental control of the human epsilon-globin gene expression is mediated by transcription regulatory elements in the 5' flanking DNA of this gene. Sequence analysis has revealed a DNA motif (GGGGAATTTGCT) similar to NF-kappaB consensus sequence resides in the negative regulatory element (-3028bp approximately -2902bp, termed e-NRAII) 5' to the cap site of this gene. NRF DNA fragment (-3010bp approximately -2986bp) containing the NF-kappaB motif similar sequence was synthesized and used in electrophoresis mobility shift assay (EMSA) and competitive analysis. Data showed that a protein factor from nuclear extracts of K562 cells specifically interacted with NRF DNA fragment. The synthetic NF DNA fragment (containing NF-kappaB consensus sequence) could competed for the protein binding, but MNF DNA fragment (mutated NF-kappaB motif) could not, suggesting that the binding protein is a member of NF-kappaB/Rel family. Western blot assay demonstrated that the molecular weight of NF-kappaB protein in the nuclei of K562 cells is 50ku. We suggested that NF-kappaB p50 may play an important role in the regulation of human epsilon-globin gene expression.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Binding Sites
  • Cell Nucleus / chemistry
  • Consensus Sequence
  • DNA / chemistry
  • Gene Expression Regulation, Developmental
  • Globins / genetics
  • Globins / metabolism*
  • Humans
  • K562 Cells
  • Molecular Weight
  • Mutation
  • NF-kappa B / chemistry
  • NF-kappa B / metabolism*
  • Nuclear Proteins / metabolism*
  • Proto-Oncogene Proteins c-rel / genetics*
  • Proto-Oncogene Proteins c-rel / metabolism
  • Regulatory Sequences, Nucleic Acid*
  • Sequence Analysis, DNA
  • Transcription, Genetic

Substances

  • NF-kappa B
  • Nuclear Proteins
  • Proto-Oncogene Proteins c-rel
  • Globins
  • DNA