Continuous in vitro evolution of a ribozyme that catalyzes three successive nucleotidyl addition reactions

Chem Biol. 2002 May;9(5):585-96. doi: 10.1016/s1074-5521(02)00136-9.

Abstract

Variants of the class I ligase ribozyme, which catalyzes joining of the 3' end of a template bound oligonucleotide to its own 5' end, have been made to evolve in a continuous manner by a simple serial transfer procedure that can be carried out indefinitely. This process was expanded to allow the evolution of ribozymes that catalyze three successive nucleotidyl addition reactions, two template-directed mononucleotide additions followed by RNA ligation. During the development of this behavior, a population of ribozymes was maintained against an overall dilution of more than 10(406). The resulting ribozymes were capable of catalyzing the three-step reaction pathway, with nucleotide addition occurring in either a 5'-->3' or a 3'-->5' direction. This purely chemical system provides a functional model of a multi-step reaction pathway that is undergoing Darwinian evolution.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • Catalysis
  • DNA-Directed RNA Polymerases / metabolism
  • Evolution, Molecular
  • Kinetics
  • Molecular Sequence Data
  • Mutagenesis
  • Nucleic Acid Conformation
  • Nucleotides / chemistry*
  • Nucleotides / metabolism*
  • Phosphorus Radioisotopes
  • Polymerase Chain Reaction
  • Promoter Regions, Genetic / genetics
  • RNA Ligase (ATP) / metabolism
  • RNA, Catalytic / chemistry
  • RNA, Catalytic / genetics*
  • RNA, Catalytic / metabolism*
  • Sequence Analysis, RNA
  • Substrate Specificity
  • Viral Proteins

Substances

  • Nucleotides
  • Phosphorus Radioisotopes
  • RNA, Catalytic
  • Viral Proteins
  • bacteriophage T7 RNA polymerase
  • DNA-Directed RNA Polymerases
  • RNA Ligase (ATP)