The nucleotide sequence of RNA1 of Lettuce big-vein virus, genus Varicosavirus, reveals its relation to nonsegmented negative-strand RNA viruses

Virology. 2002 Jun 5;297(2):289-97. doi: 10.1006/viro.2002.1420.

Abstract

The complete nucleotide sequence of RNA1 from Lettuce big-vein virus (LBVV), the type member of the genus Varicosavirus, was determined. LBVV RNA1 consists of 6797 nucleotides and contains one large ORF that encodes a large (L) protein of 2040 amino acids with a predicted M(r) of 232,092. Northern blot hybridization analysis indicated that the LBVV RNA1 is a negative-sense RNA. Database searches showed that the amino acid sequence of L protein is homologous to those of L polymerases of nonsegmented negative-strand RNA viruses. A cluster dendrogram derived from alignments of the LBVV L protein and the L polymerases indicated that the L protein is most closely related to the L polymerases of plant rhabdoviruses. Transcription termination/polyadenylation signal-like poly(U) tracts that resemble those in rhabdovirus and paramyxovirus RNAs were present upstream and downstream of the coding region. Although LBVV is related to rhabdoviruses, a key distinguishing feature is that the genome of LBVV is segmented. The results reemphasize the need to reconsider the taxonomic position of varicosaviruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Base Sequence
  • DNA-Directed RNA Polymerases
  • Lactuca / virology*
  • Molecular Sequence Data
  • Phylogeny
  • Plant Viruses / classification*
  • Plant Viruses / genetics*
  • RNA Viruses / classification
  • RNA Viruses / genetics
  • RNA, Viral / chemistry*
  • RNA, Viral / genetics
  • Rhabdoviridae / genetics
  • Viral Proteins

Substances

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • RNA, Viral
  • Viral Proteins
  • DNA-Directed RNA Polymerases

Associated data

  • GENBANK/AB011257
  • GENBANK/AB030277
  • GENBANK/AB039658
  • GENBANK/AB040874
  • GENBANK/AB075039
  • GENBANK/AF013254
  • GENBANK/AF234533
  • GENBANK/AF272001
  • GENBANK/J02428
  • GENBANK/L32603
  • GENBANK/L40833
  • GENBANK/M13215
  • GENBANK/U04608
  • GENBANK/U65312