Atomic resolution crystal structure of squid ganglion DFPase

Acta Crystallogr D Biol Crystallogr. 2002 Oct;58(Pt 10 Pt 1):1757-9. doi: 10.1107/s0907444902012714. Epub 2002 Sep 26.

Abstract

Diisopropylfluorophosphatases (DFP-ases) are capable of detoxifying chemical warfare agents like diisopropylfluorophosphate (DFP) by hydrolysis. The protein reported here was recombinantely expressed in E. coli. The X-ray crystal structure of this enzyme has been refined to a resolution of 0.85 A and a crystallographic R value of 9.4%. Reversible flash-cooling improved both, mosaicity and resolution of the crystals considerably. The overall structure of this protein represents a six-bladed beta-propeller with two calcium ions bound in a central water filled tunnel. 496 water, 2 glycerol, 2 MES-buffer molecules, and 18 PEG fragments of different lengths could be refined in the solvent region. The 208 most reliable residues, without disorder or reduced occupancy in their side-chains, were finally refined without restraints. A subsequent full-matrix refinement cycle for the positional parameters yielded estimated standard deviations (esds) by matrix inversion. The herewith calculated bond lengths and bond-esds were used to obtain averaged bond lengths, which have been compared to the restraints used in preceding refinement cycles.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Crystallography, X-Ray
  • Decapodiformes / enzymology
  • Esterases / chemistry*
  • Ganglia / enzymology
  • Models, Molecular
  • Phosphoric Triester Hydrolases*
  • Protein Conformation
  • Recombinant Proteins / chemistry
  • Static Electricity

Substances

  • Recombinant Proteins
  • Esterases
  • Phosphoric Triester Hydrolases
  • diisopropyl-fluorophosphatase