Flanking sequence tags in Arabidopsis thaliana T-DNA insertion lines: a pilot study

C R Biol. 2002 Jul;325(7):773-80. doi: 10.1016/s1631-0691(02)01490-7.

Abstract

Eight hundred and fifty Arabidopsis thaliana T-DNA insertion lines have been selected on a phenotypic basis. The T-DNA flanking sequences (FST) have been isolated using a PCR amplification procedure and sequenced. Seven hundred plant DNA sequences have been obtained revealing a T-DNA insertion in, or in the immediate vicinity of 482 annotated genes. Limited deletions of plant DNA have been observed at the site of insertion of T-DNA as well as in its left (LB) and right (RB) T-DNA signal sequences. The distribution of the T-DNA insertions along the chromosomes shows that they are essentially absent from the centrometric and pericentrometric regions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / genetics*
  • Arabidopsis / growth & development
  • Base Sequence
  • DNA Primers
  • DNA Transposable Elements / genetics*
  • DNA, Bacterial / genetics*
  • DNA, Plant / chemistry
  • DNA, Plant / genetics
  • DNA, Single-Stranded / genetics
  • Pilot Projects
  • Polymerase Chain Reaction

Substances

  • DNA Primers
  • DNA Transposable Elements
  • DNA, Bacterial
  • DNA, Plant
  • DNA, Single-Stranded
  • T-DNA