Cloning and identification of a cDNA that encodes a novel human protein with thrombospondin type I repeat domain, hPWTSR

Mol Biol Rep. 2002 Sep;29(3):287-92. doi: 10.1023/a:1020479301379.

Abstract

A cDNA was isolated from the fetal brain cDNA library by high throughput cDNA sequencing. The 2390 bp cDNA with an open reading fragment (ORF) of 816 bp encodes a 272 amino acids putative protein with a thrombospondin type I repeat (TSR) domain and a cysteine-rich region at the N-terminus, so it is named hPWTSR. We used Northern blot detected two bands with length of about 3 kb and 4 kb respectively, which expressed in human adult tissues with different intensities. The expression pattern was verified by RT-PCR, revealing that the transcripts were expressed ubiquitously in fetal tissues and human tumor tissues too. However, the transcript was detected neither in ovarian carcinoma GI-102 nor in lung carcinoma LX-1. Blast analysis against NCBI database revealed that the new gene contained at least 5 exons and located in human chromosome 6q22.33. Our results demonstrate that the gene is a novel member of TSR supergene family.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Amino Acid Motifs
  • Brain Chemistry / genetics
  • Chromosomes, Human, Pair 6
  • Cloning, Molecular
  • DNA, Complementary / genetics*
  • Exons
  • Fetus
  • Humans
  • Molecular Sequence Data
  • Protein Structure, Tertiary
  • RNA, Messenger / metabolism
  • Repetitive Sequences, Amino Acid
  • Thrombospondin 1 / genetics*
  • Thrombospondins / chemistry
  • Thrombospondins / genetics*
  • Thrombospondins / metabolism
  • Tissue Distribution
  • Tumor Cells, Cultured

Substances

  • DNA, Complementary
  • RNA, Messenger
  • RSPO3 protein, human
  • Thrombospondin 1
  • Thrombospondins

Associated data

  • GENBANK/AF251057