Investigation of the structural stability of the human acidic fibroblast growth factor by hydrogen-deuterium exchange

Biochemistry. 2002 Dec 24;41(51):15350-9. doi: 10.1021/bi026218a.

Abstract

The conformational stability of the human acidic fibroblast growth factor (hFGF-1) is investigated using amide proton exchange and temperature-dependent chemical shifts, monitored by two-dimensional NMR spectroscopy. The change in free energy of unfolding (DeltaG(u)) of hFGF-1 is estimated to be 5.00 +/- 0.09 kcal.mol(-)(1). Amide proton-exchange rates of 74 residues (in hFGF-1) have been unambiguously measured, and the exchange process occurs predominately according to the conditions of the EX2 limit. The exchange rates of the fast-exchanging amide protons exposed to the solvent have been measured using the clean SEA-HSQC technique. The amide proton protection factor and temperature coefficient estimates show reasonably good correlation. Residues in beta-strands II and VI appear to constitute the stability core of the protein. Among the 12 beta-strands constituting the beta-barrel architecture of hFGF-1, beta-strand XI, located in the heparin binding domain, exhibits the lowest average protection factor value. Amide protons involved in the putative folding nucleation site in hFGF-1, identified by quench-flow NMR studies, do not represent the slow-exchanging core. Residues in portions of hFGF-1 experiencing high conformational flexibility mostly correspond to those involved in receptor recognition and binding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amides / chemistry
  • Deuterium / chemistry*
  • Fibroblast Growth Factor 1 / chemistry*
  • Humans
  • Hydrogen Bonding
  • Kinetics
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Conformation
  • Protein Denaturation
  • Protein Folding
  • Protein Structure, Secondary
  • Protons*
  • Receptor Protein-Tyrosine Kinases / chemistry
  • Receptor, Fibroblast Growth Factor, Type 1
  • Receptors, Fibroblast Growth Factor / chemistry
  • Spectrometry, Fluorescence
  • Temperature
  • Thermodynamics
  • Urea / chemistry

Substances

  • Amides
  • Protons
  • Receptors, Fibroblast Growth Factor
  • Fibroblast Growth Factor 1
  • Urea
  • Deuterium
  • FGFR1 protein, human
  • Receptor Protein-Tyrosine Kinases
  • Receptor, Fibroblast Growth Factor, Type 1