Structure of DNA polymerase beta with the mutagenic DNA lesion 8-oxodeoxyguanine reveals structural insights into its coding potential

Structure. 2003 Jan;11(1):121-7. doi: 10.1016/s0969-2126(02)00930-9.

Abstract

Oxidative damage to DNA generates 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-oxodG). During DNA replication and repair synthesis, 8-oxodG can pair with cytosine or adenine. The ability to accurately replicate through this lesion depends on the DNA polymerase. We report the first structure of a polymerase with a promutagenic DNA lesion, 8-oxodG, in the confines of its active site. The modified guanine residue is in an anti conformation and forms Watson-Crick hydrogen bonds with an incoming dCTP. To accommodate the oxygen at C8, the 5'-phosphate backbone of the templating nucleotide flips 180 degrees. Thus, the flexibility of the template sugar-phosphate backbone near the polymerase active site is one parameter that influences the anti-syn equilibrium of 8-oxodG. Our results provide insights into the mechanisms employed by polymerases to select the complementary dNTP.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Binding Sites
  • DNA Damage
  • DNA Polymerase beta / chemistry*
  • DNA Polymerase beta / metabolism
  • DNA Repair
  • DNA Replication
  • Deoxyadenine Nucleotides / metabolism
  • Guanine / analogs & derivatives*
  • Guanine / chemistry*
  • Humans
  • Models, Molecular
  • Molecular Structure
  • Nucleic Acid Conformation
  • Protein Structure, Tertiary*

Substances

  • Deoxyadenine Nucleotides
  • 8-hydroxyguanine
  • Guanine
  • DNA Polymerase beta
  • 2'-deoxyadenosine triphosphate

Associated data

  • PDB/1MQ2
  • PDB/1MQ3