Partial purification and characterization of an 80-kDa transcription factor binding to bHLH motif in the rat p53 promoter

Mol Biol Rep. 2002 Dec;29(4):337-45. doi: 10.1023/a:1021213805408.

Abstract

E-box is one of potential cis-regulatory elements for the p53 gene. It was previously reported that USF bound to the E-box of the p53 gene. Recently, we demonstrated that an 80-kDa protein other than USF bound to the E-box and activated the transcription of the p53 gene. In the present study, the 80-kDa protein was partially purified and characterized. First, we confirmed that nuclear factors bound to the E-box in sequence-specific manner by the oligonucleotide competition assay. The binding protein to the E-box was partially purified by a sequence-specific DNA affinity chromatography. The active fraction was analyzed by SDS-PAGE and southwestern blotting assay, which showed that the 80-kDa protein was enriched. The binding activity of the 80-kDa protein was not decreased in the presence of 1.4 M urea. In addition, the binding activity was stable up to 50 degrees C. Treatment of EDTA showed that the 80-kDa protein did not require divalent cation such as Mg2+ for the maximum DNA binding activity. The competition assay with non-specific competitor, poly (dI-dC) showed that the 80-kDa protein had high affinity to its binding site. These biochemical properties provide useful insights into the 80-kDa nuclear factor binding to the p53 promoter.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Binding, Competitive
  • DNA-Binding Proteins*
  • Edetic Acid / pharmacology
  • Electrophoretic Mobility Shift Assay
  • Helix-Loop-Helix Motifs*
  • Hot Temperature
  • Molecular Weight
  • Promoter Regions, Genetic / genetics*
  • Protein Binding / drug effects
  • Rats
  • Response Elements / genetics*
  • Substrate Specificity
  • Transcription Factors / chemistry
  • Transcription Factors / isolation & purification*
  • Transcription Factors / metabolism*
  • Tumor Suppressor Protein p53 / genetics*
  • Upstream Stimulatory Factors
  • Urea / pharmacology

Substances

  • DNA-Binding Proteins
  • Transcription Factors
  • Tumor Suppressor Protein p53
  • Upstream Stimulatory Factors
  • Usf1 protein, rat
  • Urea
  • Edetic Acid