Protein family annotation in a multiple alignment viewer

Bioinformatics. 2003 Mar 1;19(4):544-5. doi: 10.1093/bioinformatics/btg021.

Abstract

Summary: The Pfaat protein family alignment annotation tool is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. The application merges display features such as dendrograms, secondary and tertiary protein structure with SRS retrieval, subgroup comparison, and extensive user-annotation capabilities.

Availability: The program and source code are freely available from the authors under the GNU General Public License at http://www.pfizerdtc.com

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Documentation*
  • Information Storage and Retrieval / methods*
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Conformation
  • Proteins / chemistry*
  • Proteins / classification
  • Sequence Alignment / methods*
  • Sequence Analysis, Protein / methods
  • Software*
  • User-Computer Interface*

Substances

  • Proteins