Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics

Proteins. 2003 May 1;51(2):162-6. doi: 10.1002/prot.10343.

Abstract

We demonstrate that chain length is the main determinant of the folding rate for proteins with the three-state folding kinetics. The logarithm of their folding rate in water (k(f)) strongly anticorrelates with their chain length L (the correlation coefficient being -0.80). At the same time, the chain length has no correlation with the folding rate for two-state folding proteins (the correlation coefficient is -0.07). Another significant difference of these two groups of proteins is a strong anticorrelation between the folding rate and Baker's "relative contact order" for the two-state folders and the complete absence of such correlation for the three-state folders.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Kinetics
  • Protein Folding*
  • Proteins / chemistry*

Substances

  • Proteins