GoMiner: A Resource for Biological Interpretation of Genomic and Proteomic Data

Genome Biol. 2003;4(4):R28. doi: 10.1186/gb-2003-4-4-r28. Epub 2003 Mar 25.

Abstract

We have developed GoMiner, a program package that organizes lists of 'interesting' genes (for example, under- and overexpressed genes from a microarray experiment) for biological interpretation in the context of the Gene Ontology. GoMiner provides quantitative and statistical output files and two useful visualizations. The first is a tree-like structure analogous to that in the AmiGO browser and the second is a compact, dynamically interactive 'directed acyclic graph'. Genes displayed in GoMiner are linked to major public bioinformatics resources.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Computer Graphics
  • Data Interpretation, Statistical
  • Databases, Genetic
  • Gene Expression Profiling
  • Genomics*
  • Humans
  • Oligonucleotide Array Sequence Analysis
  • Proteomics*
  • Software Design
  • Software*