The web server of IBM's Bioinformatics and Pattern Discovery group

Nucleic Acids Res. 2003 Jul 1;31(13):3645-50. doi: 10.1093/nar/gkg621.

Abstract

We herein present and discuss the services and content which are available on the web server of IBM's Bioinformatics and Pattern Discovery group. The server is operational around the clock and provides access to a variety of methods that have been published by the group's members and collaborators. The available tools correspond to applications ranging from the discovery of patterns in streams of events and the computation of multiple sequence alignments, to the discovery of genes in nucleic acid sequences and the interactive annotation of amino acid sequences. Additionally, annotations for more than 70 archaeal, bacterial, eukaryotic and viral genomes are available on-line and can be searched interactively. The tools and code bundles can be accessed beginning at http://cbcsrv.watson.ibm.com/Tspd.html whereas the genomics annotations are available at http://cbcsrv.watson.ibm.com/Annotations/.

MeSH terms

  • Computational Biology / methods*
  • Computer Graphics
  • Eukaryotic Cells
  • Gene Expression
  • Genome, Archaeal
  • Genome, Bacterial
  • Genome, Viral
  • Internet
  • Sequence Alignment
  • Sequence Analysis / methods*
  • Sequence Analysis, DNA / methods
  • Sequence Analysis, Protein / methods
  • Sequence Analysis, RNA / methods
  • Software*
  • User-Computer Interface